Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDLEQIYILDFTMGLRFHPLIIRKNLPLLYVAFIFLIWIQG-----------VVMAGLPGDFDTTELDVLLAAIPALPLLILYPKKMAMKFQNVQYLLYVCFN
3NE5 Chain:A ((898-958))
---------------------LLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSL-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3NE5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16655 for 232 contacts (-71.8/contact) +
2D Compatibility (PS) -5241 + (NN) -2297 + (LL) 4336
1D Compatibility (HY) -7200 + (ID) 900
Total energy: -27957.0 ( -120.50 by residue)
QMean score : 0.033
(partial model without unconserved sides chains):
PDB file :
Tito_3NE5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NE5-query.scw
PDB file :
Tito_Scwrl_3NE5.pdb
: