Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKPRIYTMSFASVYPLYIQKAEKKDRTKEEVDEIIFWLTGYDQDSLQQAIDQAIDFETFFAEAPKMNPNASLITGVICGYRVEEIEDKLMQQIRYLDKLVDELAKGKKMEKILRK
3C9P Chain:A ((7-118))
----KLYNMKFAAVYLALIAKVERKGGKAESVHQVTSWLTGYEVSDVLACLDRDVTYGDFFRQAPYYVPERIAITGKICGVRIEEIDDPLMQEIRRLDKLVDWLAKGKTSQQVLEK
General information:
TITO was launched using:
RESULT:
Template:
3C9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56509 for 831 contacts (-68.0/contact) +
2D Compatibility (PS) -12120 + (NN) -5082 + (LL) 196
1D Compatibility (HY) -11200 + (ID) 2600
Total energy: -87315.0 ( -105.07 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_3C9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C9P-query.scw
PDB file :
Tito_Scwrl_3C9P.pdb
: