Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDEETLLERGYRKYRGADVDIYFNTNVCEHSGNCVKGNVELFNLDR---------KPWIMPDNVSKEEAKRVIHTCPSGALQYIEK
1KQF Chain:B ((120-189))
------------QYANGIVD--FQSENCIGCGYCIAGCP--FNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTK
General information:
TITO was launched using:
RESULT:
Template:
1KQF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2596 for 289 contacts (9.0/contact) +
2D Compatibility (PS) -6134 + (NN) 190 + (LL) 1544
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -7654.0 ( -26.48 by residue)
QMean score : 0.066
(partial model without unconserved sides chains):
PDB file :
Tito_1KQF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KQF-query.scw
PDB file :
Tito_Scwrl_1KQF.pdb
: