Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKKAIFDSVSNMEEQIGELYQQLGDLKTNLGEMLEENNRL--NLENEHLRRRLSLTDEATPEPKAETEAE----HGVMAPNRKEAMQQMIELGEGYDNLVQLYKEGFHVCNVHFGSPRGNDEDCLFCLSLLNKK
4OO1 Chain:J ((361-423))
--------------------------LTNGVTEHVRQNAKLLANLIRDALRNIKNTN--------SETKADGILLETISVPQIRDVMER----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4OO1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3266 for 161 contacts (20.3/contact) +
2D Compatibility (PS) -5321 + (NN) -3606 + (LL) 4188
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -3723.0 ( -23.12 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_4OO1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OO1-query.scw
PDB file :
Tito_Scwrl_4OO1.pdb
: