Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVGMTRKKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFNDPEFWKSFRN----TITF--IIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLP-VITSWVAVSLVWKWLFNPSYGLINYFLSLIGIAGPNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGG--------PSGATMTLVQNIYNHAFRYF---EMGYASAMSWILFIVIFIITIIQNKLQKRWSNY
2R6G Chain:F ((259-504))
---------------------------------------------------TGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLAC-LVQWEALRGKAVYRVLLILPYAVPSFISI-LIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAIV-----------
General information:
TITO was launched using:
RESULT:
Template:
2R6G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174420 for 1557 contacts (-112.0/contact) +
2D Compatibility (PS) -23669 + (NN) -10115 + (LL) 5308
1D Compatibility (HY) -25200 + (ID) 3900
Total energy: -231996.0 ( -149.00 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_2R6G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R6G-query.scw
PDB file :
Tito_Scwrl_2R6G.pdb
: