Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMLKKGTAVLFVMIMAVMLVACGDKEETKTYTLSQNGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKAIETLEVDYTKISSEDMNKIPGMS-SNGDTSKGISMEESAKMLESQGYKEVSK
2JOE Chain:A ((2-130))
-----------------------GDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEV--
General information:
TITO was launched using:
RESULT:
Template:
2JOE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 16610 for 892 contacts (18.6/contact) +
2D Compatibility (PS) -13580 + (NN) -2622 + (LL) 3268
1D Compatibility (HY) -8800 + (ID) 2600
Total energy: -7724.0 ( -8.66 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_2JOE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JOE-query.scw
PDB file :
Tito_Scwrl_2JOE.pdb
: