Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLEAKQSAVEEIKTKLSASASTVIVDYRGLNVGEITDLRKQLRDA---GIEFKVYKNSLTRRAVEANGYEGLEGALTGPNAIAFSNE-DVVAPAKILNDFAKDHEA--LEIKAGVIEGKVASLEEIKALATLPSREGLLSMLCNVLQAPVRGLAIATKAVADQKEGQEA
1ZAV Chain:A ((5-162))
-----QQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGI---------
General information:
TITO was launched using:
RESULT:
Template:
1ZAV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58333 for 1044 contacts (-55.9/contact) +
2D Compatibility (PS) -16539 + (NN) -4266 + (LL) 1164
1D Compatibility (HY) -13600 + (ID) 2750
Total energy: -94324.0 ( -90.35 by residue)
QMean score : 0.676
(partial model without unconserved sides chains):
PDB file :
Tito_1ZAV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZAV-query.scw
PDB file :
Tito_Scwrl_1ZAV.pdb
: