Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIKSISKSELEVMKIIWDFGRAVQYADVAGKLEE--KNYSWKKNTVLTFLTRLVEKNLLSVKKVGRKNEYYALVSENEYLERQTETFVEEIYEGDVKGLITNLVQNDLISPDELEDLQQFWKRMKSPNE
1SD6 Chain:A ((8-117))
-----ISSAEWEVMNIIW----MKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEELSQDEIEELR-----------
General information:
TITO was launched using:
RESULT:
Template:
1SD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45416 for 637 contacts (-71.3/contact) +
2D Compatibility (PS) -11318 + (NN) -554 + (LL) 1276
1D Compatibility (HY) -10400 + (ID) 1900
Total energy: -68312.0 ( -107.24 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1SD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SD6-query.scw
PDB file :
Tito_Scwrl_1SD6.pdb
: