Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGARILAKIPDDAYVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSNERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYHK
1TO0 Chain:A ((2-157))
-NINIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEK---------MKIIKDKEGDRILSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRADEKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPY--
General information:
TITO was launched using:
RESULT:
Template:
1TO0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23624 for 1035 contacts (-22.8/contact) +
2D Compatibility (PS) -15432 + (NN) -5022 + (LL) 756
1D Compatibility (HY) -400 + (ID) 2000
Total energy: -45722.0 ( -44.18 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_1TO0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TO0-query.scw
PDB file :
Tito_Scwrl_1TO0.pdb
: