Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISIVLVSHSQKITEGLQEMIVEM-VGDTVHIISSGGTGDGRLGTNAIMIADNIATCTNSEHIYIFCDIGSAILSAETALELLDTDLLEKTTIIDAPLVEGAFTAAVQSLVNPSKEAILQELTNVH
3B48 Chain:A ((5-126))
---ILLVSHSKMITDGIKEMIEQMN--EEITIHSLGGTSDGSLGSDPMKIIDTINEADSDREFLIFADLGSAVLSSELAFDMLEEDQQKHYHLVDAPLVEGAFASAITAG-SDDLTQILAEAQNA-
General information:
TITO was launched using:
RESULT:
Template:
3B48.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3765 for 823 contacts (-4.6/contact) +
2D Compatibility (PS) -11624 + (NN) 2540 + (LL) 700
1D Compatibility (HY) 6000 + (ID) 700
Total energy: -6849.0 ( -8.32 by residue)
QMean score : 0.154
(partial model without unconserved sides chains):
PDB file :
Tito_3B48.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3B48-query.scw
PDB file :
Tito_Scwrl_3B48.pdb
: