Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYVITTELPSAEEFVQLRVDAGLSFRAIEASRKALLKSVYFVGLRSKENGKLIGMGRLVGDG-IMFIVSDIAVFPSFQGKGFGKVIMTHIKDYIEANLDKTACVTLLADVPAHGLYKQFGFRESAPASIGMIYQVGN
1Y7R Chain:A ((4-128))
----VTYDIPTCEDYCALRINAGMSPKTREAAEKGLPNALFTVTLYDKD--RLIGMGRVIGDGGTVFQIVDIAVLKSYQGQAYGSLIMEHIMKYIKNVSVESVYVSLIADYPADKLYVKFGFMPTEPDSGG-------
General information:
TITO was launched using:
RESULT:
Template:
1Y7R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91780 for 871 contacts (-105.4/contact) +
2D Compatibility (PS) -13282 + (NN) -5195 + (LL) 728
1D Compatibility (HY) -12800 + (ID) 2650
Total energy: -124979.0 ( -143.49 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_1Y7R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y7R-query.scw
PDB file :
Tito_Scwrl_1Y7R.pdb
: