Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQYKIKEMPLEELEPKVVEGLLEHKERLGYNIPKKDTEYIGFAALSEVGEMVGGVTAKISYGELHVSLLSVDPSTQGSGVGTELMAQIERYGRANSCHHISLTTFSYQAPEFYRKCGFTELGRVKDFPIKGEEKYFFIKYL
1Y9W Chain:A ((34-140))
---------------------------------KQPMEEVSLVVKNEEGKIFGGVTGTMYFYHLHIDFLWVDESVRHDGYGSQLLHEIEGIAKEKGCRLILLDSFSFQAPEFYKKHGYREYGVVEDHP-KGHSQHFFEKRL
General information:
TITO was launched using:
RESULT:
Template:
1Y9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49174 for 726 contacts (-67.7/contact) +
2D Compatibility (PS) -11737 + (NN) -4034 + (LL) 2880
1D Compatibility (HY) -8800 + (ID) 2150
Total energy: -73015.0 ( -100.57 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_1Y9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y9W-query.scw
PDB file :
Tito_Scwrl_1Y9W.pdb
: