Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATQKNLVDLATKAYIYGFP------FIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDT-SGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPPNWNGDVPADMIEI-KFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDRSLG--KELAFFEQLRVYMAQFPPAERDLVKQESFAPIGL--MEKGVSPYSNPSEELKNALIEGAKAGLANIKKATTNFKSENGWGLTQHLFDYNADFFEIGTKKSLDWVIEDREEAYIIRAVSAITALWGNHGYEAVYLMTWTDTDGNALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERA---NWLPAPDAEFRPMFRLYNPQQPLVDGSYHFPGFEKK |
| 3U07 Chain:A ((27-429)) | -------VDLAEDAYIYGYSIDEAYKFFYHTAVENNY-----------PLNEFQ------------PTINNDTLHLMGWLDVAAEPVIVSVPDMDEGRYWILHTMDMGHYTNAAFSSRTRGTKGGQFMFAAQDWQGEVPASVDEVVRVDSNLVKLMGRIMAVNDEDAKVALNYMDQWNIRTLSEYLGKNGPKPVQRTYPDPKKSTWLERVNFVLCDGSMGNADKQWLDKYQSIGVEPCKTDFTP-----EQLKLAKVGEKKGMEHLVELAPKMTDARTLLGTRDTLGDAPRDIFAEGT----------------------YLGQWGLPPIEASYRKSDFDSIGQKLDGSKHDYVMRFKAPNVSEFWSVTIYGNDNRLMAKNDLNRHSRGDRT--MKADKDGYYTIYMSANE----KGRADDPNFLPVPEKPFYAIMRFYGADDAIQSGEYQMP----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3U07.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 58938 for 2608 contacts (22.6/contact) +
2D Compatibility (PS) -37281 + (NN) -8116 + (LL) 3504
1D Compatibility (HY) 14400 + (ID) 1650
Total energy: 29795.0 ( 11.42 by residue)
QMean score : 0.081
|
|
|