Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLTKRIIPCLDVTAGRVVKGVNFVSLTDVGDPVEIAKAYNEAGADELVFLDITATVELRQTMIDVVERTAEQVFIPLTVGGGISSVSDMKELLQAGADKISLNSAAIKRPELIQEGAAKFGNQCIVVAIDAKWNGTNWSVFTRGGRNDTGLDAIEWAKKAVQLGAGEILLTSMDGDGTKNGYDIPLTKAISEAVSVPVIASGGCGNAAHMVEVFEKTKATAALAASIFHYGELSIKNVKTTLLEKGVNIRP
1KA9 Chain:F ((3-250))
-LAKRIVPCLDVHAGRVVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAAL-AASVFHFGEIPIPKLKRYLAEKGVHVR-
General information:
TITO was launched using:
RESULT:
Template:
1KA9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147510 for 2176 contacts (-67.8/contact) +
2D Compatibility (PS) -27362 + (NN) -10512 + (LL) 212
1D Compatibility (HY) -24800 + (ID) 7850
Total energy: -217822.0 ( -100.10 by residue)
QMean score : 0.636
(partial model without unconserved sides chains):
PDB file :
Tito_1KA9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KA9-query.scw
PDB file :
Tito_Scwrl_1KA9.pdb
: