Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYIEIYTVNGESIRLDDDAKINNISIHELSKADLKNLFNEKCIELTKYDLTYFINTNQVNWFLVSEGIH
2KDD Chain:A ((229-265))
--LTVPVGGGESLRLLAS-DLQRHSIAQLDPEALGNIKKL-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10674 for 186 contacts (-57.4/contact) +
2D Compatibility (PS) -3661 + (NN) -151 + (LL) 2768
1D Compatibility (HY) -2000 + (ID) 500
Total energy: -14218.0 ( -76.44 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_2KDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KDD-query.scw
PDB file :
Tito_Scwrl_2KDD.pdb
: