Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIWIKSLLVITACIFSLTLLNTKYTFYSPTVKLESAKVVYKLNNEPFNVRLDVPLVNQMDAPTLFNGCEVTSLAMLLQFNGKRVTKNELANNLSTTPIEQNGLHGNPDKAFVGSI-SGDSPGLGVNHAPIAKLAAKYVNEAHVHDISGNSIQDIITVLSTGAPVWIITTTDYHAP---KNWQTVQTKEGKKKITYSMHSVIITGFDKNNFYINDPYGHK-NRAVKRSVLEEGWSAMGKQAI-YLSRP
3ERV Chain:A ((29-226))
---------------------------------------------DEKVILSNVPFIQQL--PELDRGCEVTSLAMMLQYAGITVDKMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTFSESGYGVYHGPLFQLAKKYLPNKAV-DLTGKSIEELYKSVKAGQPVVIITNATF-APLDEDEFTTWETNNGDVSITYNEHCVVLIGYDQESVYIRDPLKDSLDVKVPREKFEQAWVQMGSQAISYVKR-
General information:
TITO was launched using:
RESULT:
Template:
3ERV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91758 for 1554 contacts (-59.0/contact) +
2D Compatibility (PS) -21011 + (NN) -7855 + (LL) 4372
1D Compatibility (HY) -20400 + (ID) 3850
Total energy: -140502.0 ( -90.41 by residue)
QMean score : 0.690
(partial model without unconserved sides chains):
PDB file :
Tito_3ERV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ERV-query.scw
PDB file :
Tito_Scwrl_3ERV.pdb
: