Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIRLARIDDRLIHGQVATVWTKETQVERIIVISDDVAKDEVRKTLLTQVAPPGVKASVVDVQKGIRVYNNPKYATTPVMLLFTNPTDVLTLVEAGVNITTVNIGGMAFREGKHMITNAVSVDETDEAAFRKLDEKGIELEIRKVASDNKVKLIPLLDKDK
1VSQ Chain:C ((4-162))
MVIGLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTAHVVDVAKMIRVYNNPKYAGERVMLLFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQVNNAVSVDEKDIEAFKKLNARGIELEVRKVSTDPKLKMMDLISK--
General information:
TITO was launched using:
RESULT:
Template:
1VSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110699 for 1194 contacts (-92.7/contact) +
2D Compatibility (PS) -17139 + (NN) -6880 + (LL) -12
1D Compatibility (HY) -20400 + (ID) 5750
Total energy: -160880.0 ( -134.74 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_1VSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VSQ-query.scw
PDB file :
Tito_Scwrl_1VSQ.pdb
: