Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYEKARQMMIEAHSGQVRKITGEPYFSHPLNVARILRRAGFREEVVVAGLLHDAVEDTEMTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGNLEEKALIVADKLDNLTSVKYALSSEGKSVWSYFKRGYDLQKWYNQGIKNNMEYGLNPSEIPPFFDEYARLVKWIFKK |
4YF1 Chain:A ((28-186)) | --------------------TGEPYFSHPLNVARILRRAGFREEVVVAGLLHDAVEDTEMTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGNLEEKALIVADKLDNLTSVKYALSS--KSVWSYFKRGYDLQKWYNQGIKNNMEYGLNPSEIPPFFDEYARLVKWIFK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YF1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 31572 for 1134 contacts (27.8/contact) +
2D Compatibility (PS) -16215 + (NN) -3479 + (LL) 2288
1D Compatibility (HY) 2400 + (ID) 2150
Total energy: 14416.0 ( 12.71 by residue)
QMean score : 0.277
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