Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLKVTGLKKSFGANEVLKGIDIEVKEGEVVCVIGPSGSGKSTFLRCMNNLEEITAGEVVVDDFNITDKKVDINKVRENIGMVFQHFNLFPHLSVLENITLAPVELKKMDKEAAKSNALRLLEQVGLREKAEEFPNQLSGGQKQRVAIARALAMDPDIMLFDEPTSALDPEMVGEVLGVMKELAKGGMTMMIVTHEMGFAREVGDRVIFMDGGYIVEEGKPADIFDNPTNERTISFLDKVL
3C41 Chain:J ((4-242))
---IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLSKVF
General information:
TITO was launched using:
RESULT:
Template:
3C41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144453 for 1967 contacts (-73.4/contact) +
2D Compatibility (PS) -25896 + (NN) -11347 + (LL) 324
1D Compatibility (HY) -33600 + (ID) 8050
Total energy: -223022.0 ( -113.38 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_3C41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C41-query.scw
PDB file :
Tito_Scwrl_3C41.pdb
: