Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLIINENEQLVAETVSRRIIELVKEKPASLICIAGGDTPLLTIEALIKANQAGEVDFSNTQFVGLDEWVGLGRETKGSCIQTLYDAFFDRLKNVSSEQICFFDGKATSLTDECARVDKFIDDRGGMDFILLGIGLNGHIGFNEPFVPVDVNCHVVELDDVTKRVMSKYFDT-DLPLTHGISLGMQQILAAKEIFLVATGEKKIDIVKQVVEKEPTVAIPATLVK-DSNTMLVVDKIAASGVEA
2BKV Chain:A ((1-239))
MKVMECQTYEELSQIAARITADTIKEKPDAVLGLATGGTPEGTYRQLIRLHQTENLSFQNITTVNLDEYAGLSSDDPNSYHFYMNDRFFQHIDSKPSRHF-IPNGNADDLEAECRRYEQLVDSLGDTDIQLLGIGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARYFPSIDSVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNISEDFPASALHLHSDVTVLIDREAAS----
General information:
TITO was launched using:
RESULT:
Template:
2BKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -189663 for 2033 contacts (-93.3/contact) +
2D Compatibility (PS) -25269 + (NN) -8028 + (LL) 324
1D Compatibility (HY) -10000 + (ID) 3850
Total energy: -236486.0 ( -116.32 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_2BKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BKV-query.scw
PDB file :
Tito_Scwrl_2BKV.pdb
: