Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTINSVDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYQQGIELTDKEGDNVTNDMLIAFKASIDKHIWMFKAFLGKAPLE
2IY4 Chain:A ((6-156))
-----SVDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYQQGIELTDKEGDNVTNDMLIAFKASIDKHIWMFKAFLGKAPLE
General information:
TITO was launched using:
RESULT:
Template:
2IY4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50370 for 1105 contacts (-45.6/contact) +
2D Compatibility (PS) -16632 + (NN) -10845 + (LL) 448
1D Compatibility (HY) -22000 + (ID) 7550
Total energy: -106949.0 ( -96.79 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_2IY4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IY4-query.scw
PDB file :
Tito_Scwrl_2IY4.pdb
: