Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQKTFIKVTCSILTISDTRNLDTDTSGQLIQSALETAGHEVISRVVVPDDVTLIKQKINELAANGS---FCLITNGGTGIARRDVTYEALFATIQQEIPGFGEIFRMLSY-EEVGSRAMVSRAFAGFSESGLLLFALPGSSNACQLAVQKLIIPELPHLIAERQK
1Y5E Chain:A ((13-168))
-------EVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAV--LAGYHKEDVDVVLTNGGTGITKRDVTIEAVSALLDKEIVGFGELFRMISYLEDIGSSAMLSRAIGG-TIGRKVVFSMPGSSGAVRLAMNKLILPELGHITFELHR
General information:
TITO was launched using:
RESULT:
Template:
1Y5E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106578 for 1258 contacts (-84.7/contact) +
2D Compatibility (PS) -16256 + (NN) -6352 + (LL) 1040
1D Compatibility (HY) -14400 + (ID) 3900
Total energy: -146446.0 ( -116.41 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1Y5E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y5E-query.scw
PDB file :
Tito_Scwrl_1Y5E.pdb
: