Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIVESKLAGVKLVKPKVFGDHRGFFMESYNEKAFHEAGIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNVLYKVDQLYSPENDAGIAYDDPDLNITWPTDKLILSDKDTKHPRLKDAENNFVWENK
3RYK Chain:A ((25-198))
MKVIETNFTDAKLLEPRLFGDDRGFFTESYNKKVLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPHTIVMYKVDEYYSADHDSGVLWNDKELAIPWPVTSPILSDKDRILPLL------------
General information:
TITO was launched using:
RESULT:
Template:
3RYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73631 for 1328 contacts (-55.4/contact) +
2D Compatibility (PS) -18518 + (NN) -4570 + (LL) 644
1D Compatibility (HY) -18800 + (ID) 4800
Total energy: -119675.0 ( -90.12 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_3RYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RYK-query.scw
PDB file :
Tito_Scwrl_3RYK.pdb
: