Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEALGLVETKGLVGAIEAADAMVKSANVTLTGYEKIGSGLVTVMVRGDVGAVKAATEAGAAAAKNVGTVMSTHVIPRPHTDVEEILPVRVKSDE
3NGK Chain:A ((4-89))
--EALGMVETKGLTAAIEAADAMVKSANVMLVGYEKIGSGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPHTDVEKILP-------
General information:
TITO was launched using:
RESULT:
Template:
3NGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37321 for 677 contacts (-55.1/contact) +
2D Compatibility (PS) -9681 + (NN) -4454 + (LL) 876
1D Compatibility (HY) -9200 + (ID) 3650
Total energy: -63430.0 ( -93.69 by residue)
QMean score : 0.621
(partial model without unconserved sides chains):
PDB file :
Tito_3NGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NGK-query.scw
PDB file :
Tito_Scwrl_3NGK.pdb
: