Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNDKLPASVLSVKVVSNVDNGLFKQLDLKPHQRSLGIITSDCDDVTYTALDEATKAAEVDVVYAKSMYAGAGNASTKFAGEVIGIIAGPSPAEVKSGLAVAVDFIENGASFVSANEDDSVPYFAHCVSRTGTFLSKEANVAEGEAIAYLIAPPLEAMYALDAALKAADVTIGAFYGPPSETNFGGALLTGSQSACKAACDAFKMAVENVAENPLQY
3U27 Chain:C ((5-220))
-KGDRLKANVLAVRLIPNVDSDMAKELGLPNEHRSIGILTADCDDVTYTALDEATKKAVVDVAYGKSFYGGAANANTKLAGEVIGILSGPTPAEVKSGLAAAVDFIENEAAFISANDDDSIAYFAHCISRTGTYLSKTAGIPEGESLAYLIAPPLEAMYALDVALKAADVRLVAFYGPPSETNFGGGLLTGSQSACKAACDAFAEAVKFVADNPLNY
General information:
TITO was launched using:
RESULT:
Template:
3U27.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58749 for 2080 contacts (-28.2/contact) +
2D Compatibility (PS) -23429 + (NN) -11616 + (LL) 208
1D Compatibility (HY) -24400 + (ID) 7800
Total energy: -125786.0 ( -60.47 by residue)
QMean score : 0.663
(partial model without unconserved sides chains):
PDB file :
Tito_3U27.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U27-query.scw
PDB file :
Tito_Scwrl_3U27.pdb
: