Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYTAHEKQKQPPKETTSPSKSNGEHKEIKQAIRYIKKNIHRS-ITLEEVANHVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRASYFCKVFKKEFKMTPKEYRDSLK
2K9S Chain:A ((4-103))
--------------------------------------------------------------------------------RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFR----
General information:
TITO was launched using:
RESULT:
Template:
2K9S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43192 for 659 contacts (-65.5/contact) +
2D Compatibility (PS) -10388 + (NN) -5430 + (LL) 4984
1D Compatibility (HY) -9200 + (ID) 1700
Total energy: -64926.0 ( -98.52 by residue)
QMean score : 0.672
(partial model without unconserved sides chains):
PDB file :
Tito_2K9S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K9S-query.scw
PDB file :
Tito_Scwrl_2K9S.pdb
: