Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYIKNPAK-IEEKSFEIIQQIIDDIRPDYTFQNKLEEAIIKRAIHTTADFDYLDSLVFQQDAIAKIIHVLQNKGTIFTDTNMALSGINKRLLDELGCKYHCYVSDPETMEIAKQHGITRSMAGIKLASLKD--GPKLFVLGNAPTAVYKIIEMVESGQLQADAVVAVPVGFVGAAECKEEILE------TDIPAIVARGRKGGSNLAAAIINAILITM
2AFR Chain:A ((6-215))
--QITNLGRNIENKSF----SIIDEEAGPHSFAQE-EWEVVRRIIHATADFDYKNITKIHPQAIDSGIQALKKGCPIVCDVQMILSGLNPERLKVYGCKTYCFISDEDVIENAKRKNSTRAIESIQKANSFNLLNESIIVIGNAPTALLEIEKLIRQEGIKPALIVGVPVGFVSAKESKESILKLEYYNVTSIPYILTMGRKGGSTIAVAILHALLL--
General information:
TITO was launched using:
RESULT:
Template:
2AFR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153281 for 1674 contacts (-91.6/contact) +
2D Compatibility (PS) -22270 + (NN) -8802 + (LL) 1196
1D Compatibility (HY) -16000 + (ID) 4100
Total energy: -203257.0 ( -121.42 by residue)
QMean score : 0.705
(partial model without unconserved sides chains):
PDB file :
Tito_2AFR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AFR-query.scw
PDB file :
Tito_Scwrl_2AFR.pdb
: