Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQTKKVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDLNCEIPNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
3ZOQ Chain:A ((5-225))
---LQDSWWNQLKEEFEKPYYQELREMLKREYAEQTIYPDSRDIFNALHYTSYDDVKVVILGQDPYHGPGQAQGLSFSVKPGVKQPPSLKNIFLELQQDIGCSIPNHGSLVSWAKQGVLLLNTVLTVRRGQANSHKGKGWERLTDRIIDVLSERERPVIFILWGRHAQMKKERIDTSKHFIIESTHPSPFSARNGFFGSRPFSRANAYLEKMGEAPIDWCIKDL
General information:
TITO was launched using:
RESULT:
Template:
3ZOQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116376 for 1802 contacts (-64.6/contact) +
2D Compatibility (PS) -23916 + (NN) -9350 + (LL) 476
1D Compatibility (HY) -22400 + (ID) 6400
Total energy: -177966.0 ( -98.76 by residue)
QMean score : 0.620
(partial model without unconserved sides chains):
PDB file :
Tito_3ZOQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZOQ-query.scw
PDB file :
Tito_Scwrl_3ZOQ.pdb
: