Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNPTKEEIQHILKKAKVIAVVGLSDKPDRTSYRVSQIMQQAGYKIIPVNPN--ADEILGEKTVKHLTDIEEHVDIVNVFRRSEFLPEIAEAFDQIDADVFWAQLGIANQEAFDFLTEKGYPTVMDYCIKVAYQEMD
2DUW Chain:A ((5-125))
-------DIAGILTSTRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVVMDRC---------
General information:
TITO was launched using:
RESULT:
Template:
2DUW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75228 for 923 contacts (-81.5/contact) +
2D Compatibility (PS) -13262 + (NN) -2734 + (LL) 1380
1D Compatibility (HY) -10400 + (ID) 2550
Total energy: -102794.0 ( -111.37 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_2DUW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DUW-query.scw
PDB file :
Tito_Scwrl_2DUW.pdb
: