Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LNVRANRVSEQMKKELGDILNRKIKDPRLGFVT-VTGVDVTGDLQEAKVFISILGTDKEKENT---LLALAKAHGFIRSEIGRRIRLRKVPEMSFEIDNSIAYGNRIDELLRDLNNDQ
1KKG Chain:A ((7-108))
---RPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFL-NDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMR------------
General information:
TITO was launched using:
RESULT:
Template:
1KKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31423 for 662 contacts (-47.5/contact) +
2D Compatibility (PS) -10521 + (NN) -6496 + (LL) 784
1D Compatibility (HY) -11200 + (ID) 2450
Total energy: -61306.0 ( -92.61 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_1KKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KKG-query.scw
PDB file :
Tito_Scwrl_1KKG.pdb
: