Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LSKQNVPSYGGQAVVEGVMFGGRKQTVTAIRRI-------DGSLEYFYLEKNSPVWVMRMKKIPFLRGIVALIESSAIGSKHLAFATDRYDEDPNNPVEEEKIEKKESKVAMWLGVAVIGILSFVFAKFVMTLIPVFLAELFRPIVPGDTAQVFLESLFKLILLLTYIFAVSQTPIIKRVFQYHGSEHKVINCYEENLPLTVENVQKQSRLHYRCGSSFILFTVIVGMFIYLLVPTDPLWLRVVDRILLIPVVLGVAFEVLQLTNKCRNIPVLKYLGVPGLWLQLLTTKEPSDDQVEVAIASFNELLRVEKEGAPIDVVEPDNLELLE |
| 1MZJ Chain:A ((139-212)) | --------------------GSRHVLVVATERMTDVIDLADRSLSFLFGD-GAGAAVVGPSDVPGIGPVVRGIDGTGLGSLHMSSSWDQYVEDPS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MZJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -4789 for 232 contacts (-20.6/contact) +
2D Compatibility (PS) -7176 + (NN) -1129 + (LL) 22084
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: 4790.0 ( 20.65 by residue)
QMean score : -0.120
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