Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VATKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEEIPFEADGE
1VP7 Chain:A ((20-69))
-------FETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQV------------------
General information:
TITO was launched using:
RESULT:
Template:
1VP7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7804 for 245 contacts (31.9/contact) +
2D Compatibility (PS) -5393 + (NN) -2669 + (LL) 1784
1D Compatibility (HY) 400 + (ID) 500
Total energy: 1426.0 ( 5.82 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_1VP7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VP7-query.scw
PDB file :
Tito_Scwrl_1VP7.pdb
: