Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LELPFSGQSIIPAAHNQKDMEKILELGLTYMVMLETHVAQLKSLVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSACNKGVALIQKVQPDCIELLPGII-PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLW
1VKF Chain:A ((20-182))
---------------ALWDMDSIGEIEPDVVFLLKSDILNLKFHLKILKDRGKTVFVDMDFVNGLGEGEEAILFVKK-AGADGIITIKPKNYVVAKKNGIPAVLRFFALDSKAVERGIEQIETLGVDVVEVLPGAVAPKVARKIPG---RTVIAAGLVETEEEAREILKH-VSAISTSSRILW
General information:
TITO was launched using:
RESULT:
Template:
1VKF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123168 for 1248 contacts (-98.7/contact) +
2D Compatibility (PS) -16608 + (NN) -83 + (LL) 1156
1D Compatibility (HY) -13600 + (ID) 2650
Total energy: -154953.0 ( -124.16 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_1VKF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKF-query.scw
PDB file :
Tito_Scwrl_1VKF.pdb
: