Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYEYFPGFYDRLMDSELYDEWLEFSADFIGDAPKKVLDLACGTAEFALRLSFSGHQVTGVDLSKEMVAVAKEKVAAAEIDLPIIEQDMSKLALKQTFDVVTCFCDSLNYLETEQALEATIQAVSAHLEPNGLFLFDVHSVFKIEQGFKDYSYGDSDEEISTIWNSFPGEHPHSIEHELTFYILGEDDTYNRVDELHKERTYPIATYENLLKKFGFTKIDIYADFSHEKPNKTSERIFFAARK
3D2L Chain:A ((6-242))
----QFAYVYDELMQDVPYPEWVAWVLEQV-EPGKRIADIGCGTGTATLLLA-DHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK
General information:
TITO was launched using:
RESULT:
Template:
3D2L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119829 for 1934 contacts (-62.0/contact) +
2D Compatibility (PS) -25413 + (NN) -10055 + (LL) 336
1D Compatibility (HY) -18800 + (ID) 4950
Total energy: -178711.0 ( -92.40 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_3D2L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D2L-query.scw
PDB file :
Tito_Scwrl_3D2L.pdb
: