Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKNIDVLQNWLKDQGAEVGFLTDPENIAYFSGYHSEPHERVLGLAVFSDSEPFLFTPALEVEDVRGGDWTHPAYGYNDTENPFTIIA----DEIKKRVANPSKFAIEKKHMSVDRYEQLGGLFSGSSFIPIEHKIEQIRLIKTEAELKILKEAALLADYAVQVGVDEIAEGKTEAEIVAKIEYEMKKKGVTAMSFDTMVLTGKNGALPHGTPGETKIKKGDLVLFDLGVVHKGYCSDITRTVAFGDISDEQKKIYDTVLEAQIAAVEKVKAGVKASEIDLTARNIIREAGFGDYFPHRLGHGLGASVHEFPSITETNSMELQENMVFTIEPGIYVPGVAGVRIEDDLVVTKDGVQVLTEFPKTLQVIE |
| 1PV9 Chain:A ((8-345)) | -------LVKFMDENSIDRVFIAKPVNVYYFSG--TSPLGG--GYIIVDGDEATLYVPELEYEMAK-------------EESKLPVVKFKKFDEIYEILKNTETLGIEGT-LSYSMVENFKEKS-VKEFKKIDDVIKDLRIIKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFIHSLGHGVGLEIHEWPRISQYDETVLKEGMVITIEPGIYIPKLGGVRIEDTVLITENGAKRLTKTER------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PV9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136234 for 2835 contacts (-48.1/contact) +
2D Compatibility (PS) -37091 + (NN) -20028 + (LL) 1676
1D Compatibility (HY) -26800 + (ID) 6800
Total energy: -225277.0 ( -79.46 by residue)
QMean score : 0.565
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