Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VENTIVIKLGGVA--SDNLTEGFFRQITEWQAANKKIVLVHGGGHYITKMMEALAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNASDTGLLEADRLSDT-DLGLVGKITKVKTNLIEQLLSENIITVIAPLGINSEHDWLNVNADTAACEVASALHAEALYLLTDVPGVKNGSEIIGEIATAEIEKLQSTGVIKGGMIPKLASAAFAAENGVGQVIITDSLNNSGTKIKNKVAIG
2BTY Chain:A ((23-254))
---TFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKDGKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHI------------------
General information:
TITO was launched using:
RESULT:
Template:
2BTY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -181274 for 1855 contacts (-97.7/contact) +
2D Compatibility (PS) -25102 + (NN) -6687 + (LL) 716
1D Compatibility (HY) -20400 + (ID) 4550
Total energy: -237297.0 ( -127.92 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_2BTY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BTY-query.scw
PDB file :
Tito_Scwrl_2BTY.pdb
: