Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKVSIIGATGYGGLELIRLLHQHSSVDIATLHSFSAQAETLATFYPHLKDLAVSPLEKINPTEIIEKSDTVFIATPSGIAKDIALPYVDAGLNVIDLSGDFRLKDRQLYEKWYGKSAAPTEYIGKAEYGLAEF--REKKETTFIANPGCYATATLLGLAPLATNKLIDPTSIIVDAKSGISGAGKVPSASTHFTETNENMTLYKMNSHQHIPEIMQQLTKWDESIPAIQFSTSLIPITRGIFTTIYVKPKNPITQKELHKLYESTYDNAPFVRIQPENVYPTVKQVTASNYCDIGLAYNEKTNVITIVSVIDNLVKGAAGQAIQNLNIMANFAESDGLRFIPVYP |
1VKN Chain:A ((2-339)) | IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFP--STLENSILSEFDPEKVSKNCDVLFTALPAGASYDLVREL--KGVKIIDLGADFRFDDPGVYREWYGKELSGYENI-KRVYGLPELHREEIKNAQVVGNPGCYPTSVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVDYLFSEVNESLRPYNVAKHRHVPEMEQELGKISGKKVNVVFTPHLVPMTRGILSTIYVKTDKSL--EEIHEAYLEFYKNEPFVHVLPMGIYPSTKWCYGSNHVFIGMQMEERTNTLILMSAIDNLVKGASGQAVQNMNIMFGLDETKGLEFTPIYP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VKN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -92270 for 2800 contacts (-33.0/contact) +
2D Compatibility (PS) -34706 + (NN) -10671 + (LL) 336
1D Compatibility (HY) -7600 + (ID) 4450
Total energy: -149361.0 ( -53.34 by residue)
QMean score : 0.288
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