Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTLTNKLAE---KEHAAVVTYIMGGDGGLDNLEEQLLFLEKSGVSAIEIGIPFSDPVADGPIIQLAGLRALKEQVSLEAILNKL--AMSKVQIPLIIMSYINPIFHLGIPKFVELVQKTPVKGLIIPDLPYEHQKLITPELQGTDIALIPLVSLTSPKERLEEIAKQAEGFIYAVTVNGTTGVRSEFDAHIDSHLAYLKSISPVPVLAGFGVSSIEHVEKFAHV-CDGVIIGSKVVQMLHEEKTAELGAFLQKAAEVRIKN
1RD5 Chain:A ((2-246))
-SRPVSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKE----AGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQG-------------
General information:
TITO was launched using:
RESULT:
Template:
1RD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -204965 for 2023 contacts (-101.3/contact) +
2D Compatibility (PS) -27032 + (NN) -19185 + (LL) 2268
1D Compatibility (HY) -18800 + (ID) 4450
Total energy: -272164.0 ( -134.53 by residue)
QMean score : 0.663
(partial model without unconserved sides chains):
PDB file :
Tito_1RD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RD5-query.scw
PDB file :
Tito_Scwrl_1RD5.pdb
: