Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLRGILPFAHDTLRKVVRSGDYVVDATCGNGHDTLLLAELVGINGHVLGFDIQQLAIDATNTRLENAGVSSQVELVCASHARI----PEYTSKPVRAAIFNLGYLPGGDKEITTTADSTLESIGHLMELLEVGGVIILVIYHGHPAGKQEKDAVMTFCEAIPQQDFHVLSYNFINQKNDAPFVIIIEKRKPRQS
4PON Chain:A ((7-195))
MILKKILPYSKELLKMAAGEGDIVIDATMGNGHDTQFLAELVGENGHVYAFDIQESAVANTKERLGEA-YQARTTLFHKSHDKIAKSLPPETHGKVAAAVFNLG-----------NGSSTIKAIEQLLSIMKDEGLIVLVVYHG--------NDVLDFCRNLDQQAARVLTYGFINQQNDPPFIVAIEKK-----
General information:
TITO was launched using:
RESULT:
Template:
4PON.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168019 for 1304 contacts (-128.8/contact) +
2D Compatibility (PS) -18029 + (NN) -5823 + (LL) 356
1D Compatibility (HY) -17600 + (ID) 4000
Total energy: -213115.0 ( -163.43 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_4PON.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PON-query.scw
PDB file :
Tito_Scwrl_4PON.pdb
: