Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEGVENKVIVLAGMIGAGKSSYTELIANELGTKAFYESIKDNRILEMFYDDPKRWAFALQIYFLNTRFRSIKAALTDQNNVLDRSIYEDALFTQINFEEGNISEPEMDTYLDLLDNMMEELAYMPKKAPDLLIYLRGSLDTVLSRIALRGRPYEQIDDNPGLLEYYKHLHSRYDSWFASYDKSETLVINIDEIDINKPNDADYVMQLIHEKLKR
2JAQ Chain:A ((3-169))
--------IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLK------NIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLEN----KLSFDIVIYLRVSTKTAISRIKKRGRSEELLIGE----EYWETLNKNYEEFY-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JAQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70351 for 1137 contacts (-61.9/contact) +
2D Compatibility (PS) -16177 + (NN) -4157 + (LL) 4196
1D Compatibility (HY) -14800 + (ID) 2800
Total energy: -104089.0 ( -91.55 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_2JAQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAQ-query.scw
PDB file :
Tito_Scwrl_2JAQ.pdb
: