Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIAIFASGSGSNFQALVDDEF---IKPYVKLLVCDKPNAYVLERANKHDIPVFLFEAKNYPDKEAFETEILLELRRLEIDLLVLAGYMRLIGPTLLAEFPEQIVNLHPSLLPEFKGKDAIGQAIQANVSGTGVTAHFVDAGMDTGPIIDQVKVTIETAETTDTLAEKIHQVEHIFYPKVIRGLIQNGGND
3AV3 Chain:A ((3-186))
-RLAVFASGSGTNFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYMRLIGPTLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYRAGVSETGVTVHYVDEG-DTGPVIAQRVVPIVPGEPIEALEERIHQVEHELYPTVLRMLL------
General information:
TITO was launched using:
RESULT:
Template:
3AV3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118384 for 1429 contacts (-82.8/contact) +
2D Compatibility (PS) -19743 + (NN) -12536 + (LL) 236
1D Compatibility (HY) -9200 + (ID) 3550
Total energy: -163177.0 ( -114.19 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_3AV3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AV3-query.scw
PDB file :
Tito_Scwrl_3AV3.pdb
: