Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTNELVYEGKAKRLFKTEEAGVLRVAYKDDATALNGVRKESFAGKGELNNQITSLIFSHLAEAGIESHFIRAISETEQLVKEVSIIPLEVVVRNVMAGSLAKRLGKEEGEQIPNAIVEFYYKDDALDDPFINDDHVLYLEVATTSEMDTIRQAARSINKVLQELFNQMNITLIDFKLEFGRDAAGEILLADEISPDTCRLWDKETNQKLDKDVFRRNIGNLTDVYTEVLNRLKQVQN
2YWV Chain:A ((7-236))
--QQLLYEGKAKKIYATDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLKLREAGIANHFIEKLSPTEQLVRRVTIIPLEVVVRNVVAGSLAKRIGLEEGTPLEAPLVEFYYKNDDLGDPLLLEDHIFILKLASREEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEFGRTADGAILLADEISPDTCRLWDAKTNEKLDKDVFRRDLGSLTDAYEVILQRL-----
General information:
TITO was launched using:
RESULT:
Template:
2YWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78167 for 1812 contacts (-43.1/contact) +
2D Compatibility (PS) -24013 + (NN) -2733 + (LL) 660
1D Compatibility (HY) -28800 + (ID) 6950
Total energy: -140003.0 ( -77.26 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_2YWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWV-query.scw
PDB file :
Tito_Scwrl_2YWV.pdb
: