Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKP-IIALDFQTYEEVETFLAKFSGETLSVKVGMELFYSNGPVIVEKIKQQNHEIFLDLKLHDIPNTVKSAMIGLAKLGVDMVNVHAAGGKKMMEAAKEGLEIGSPSGK-RPKIIAVTQLTSTSETDMQTEQLIKTSLLESVMHYSNLSKQAGLDGVVCSALEAEDIKQQNGADFLRVTPGIRLASDTADDQIRVVTPEKARLIGSSNIVVGRSITRANDPVAAYNQVLKEWNA
2YYT Chain:A ((6-236))
---PFIVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGASFLAVT----------------VTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWN-
General information:
TITO was launched using:
RESULT:
Template:
2YYT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92203 for 1732 contacts (-53.2/contact) +
2D Compatibility (PS) -23519 + (NN) -10562 + (LL) 1204
1D Compatibility (HY) -22000 + (ID) 6600
Total energy: -153680.0 ( -88.73 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_2YYT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YYT-query.scw
PDB file :
Tito_Scwrl_2YYT.pdb
: