Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VLQTEMKVIQQTEIADKVYELILTGECVAGMS-PGQFLMLKPSRSDLLMRRPISICSYDKTAKTCILLYRV--EGDGTRDFSKLSEGDTIDVLGPLGKGFDIDTTPAPKTALLIGGGIGVPPMYQLGKELAEKGVQVMFVNGFQSAKDSFYAQEMAEYG--TVHIATVDGSLGTQGFVTDITKNFPEEPDVIYSCGPKAMLQAVKASFPE-TKTYLSLEERMACGIGACYACVCPKADDTNKQFKVCEDGPVFRADEVKL
1EP1 Chain:B ((3-261))
-LQEMMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKLSKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTGCQMTILLGFASENVKILENEFSNLKNVTLKIATDDGSYGTKGHVGMLMNEIDFEVDALYTCGAPAMLKAVAKKYDQLERLYISMESRMACGIGACYACVEHDKEDESHALKVCEDGPVFLGKQLSL
General information:
TITO was launched using:
RESULT:
Template:
1EP1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156836 for 2091 contacts (-75.0/contact) +
2D Compatibility (PS) -27479 + (NN) -10147 + (LL) 192
1D Compatibility (HY) -30000 + (ID) 5900
Total energy: -230170.0 ( -110.08 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_1EP1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EP1-query.scw
PDB file :
Tito_Scwrl_1EP1.pdb
: