Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKASISIDEKKDFIRWFLNKHQMKTREAMWVLNYIAGHDQIVKYVHFVDNLEGCARGLSLSAHGVESEPFLFFKGNIMTTDPEKAFHDIRLNWDEELYVELHFEEAMSSPEYALVREDNPFAA--VKLADEEKEMADALIYQSVHQFSREKVLQQIDEALDTRDEAAFHKLVRILQQMDTEKE
3DO9 Chain:A ((4-179))
---PVSVNEKKDFVKWFLNNYQLKQRECVWILNYLMSHDQLMHKVHFVEHAKYCPRGLVMSANCVKDTPFHFFKQNVMTTDAEKSFHDIRLNRDEDIYIQLNFKSSFQNANYVAVLEENPYLPKHIEVNEKDRLLAERFLEESVFSFRRERLLKQIDEALDKQDKEAFHRLTAELKMLE----
General information:
TITO was launched using:
RESULT:
Template:
3DO9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65683 for 1194 contacts (-55.0/contact) +
2D Compatibility (PS) -18706 + (NN) -8630 + (LL) 740
1D Compatibility (HY) -18800 + (ID) 4050
Total energy: -115129.0 ( -96.42 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_3DO9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DO9-query.scw
PDB file :
Tito_Scwrl_3DO9.pdb
: