Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKVAISGGGTGGHVYPALALIRELKKSHPEAEFLYIGTEKGLEAGIVKREGIPFEAIEITGFKRSLSLENIKTVMRFLSGAKKSKQILRDFKPDVVIGTGGYVCGPVVYAAAKLKIPTLIHEQNSVAGLTNKFLSRYTDKVAICFEEVSDSF-ASEKIVFTGNPRASEVVGVDSEGALEAYG---LVSGKPTVLVFGGSRGARGVNEAVEAVLPEWNNR-----DFQLLYVTGDVHYEKIKDSLAELNLGNHISVQPFIYDMPKILNAVTLVVSRAGATTLAELTALGVPSILIPSPYVTANHQENNARALEKNNAAIVITEAELKNTDLMATVDSILNDEAKLNSMKLSAKQMGRPDAAAKLVEAVLSIMK |
3S2U Chain:A ((5-355)) | --VLIMAGGTGGHVFPALACAREFQARGYAVHWL--GTPRGIENDLVPKAGLPLHLIQ--------------APLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNAVAGTANRSLAPIARRVC---EAFPDTFPA---RLTTGNP-------VRGELFLDAHARAPLTGRRVNLLVLGGSLGAEPLNK----LLPEALAQVPLEIRPAIRHQAGRQHAEITAERYRTVAV--EADVAPFISDMAAAYAWADLVICRAGALTVSELTAAGLPAFLVP-----DDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACLEVA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3S2U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172046 for 2909 contacts (-59.1/contact) +
2D Compatibility (PS) -34498 + (NN) -11980 + (LL) 3164
1D Compatibility (HY) -20000 + (ID) 5750
Total energy: -241110.0 ( -82.88 by residue)
QMean score : 0.601
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