Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMEETTKIPQATAKRLPLYHRYLKYLDESGKERVSSAELSEAVKVDSATIRRDFSYFGALGKKGYGYNVSYILDFFSKTLSQDKQTNVALIGVGNLGTALLHYNFMKNNNIKIVAAFDVDPAKVGSVQQDIPIYHLNDMEEIVRENGVEVVILTVPADEAQVTVDRLIEADVKGILNFTPARISVPKQVRVHHIDLTTELQTLIYFLENYPAKTE
2VT2 Chain:A ((11-209))
----------ATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALG-----YNVDYLLSFFRKTLDQD---DVILIGVGNLGTAFLHY-------TKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDE--SVAILTVPAVAAQSITDRLVALGIKGILNFTPARLNVPEHIRIHHIDLAVELQSLVYFLKHYS----
General information:
TITO was launched using:
RESULT:
Template:
2VT2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139950 for 1270 contacts (-110.2/contact) +
2D Compatibility (PS) -19441 + (NN) -4725 + (LL) 1556
1D Compatibility (HY) -22400 + (ID) 6050
Total energy: -191010.0 ( -150.40 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_2VT2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VT2-query.scw
PDB file :
Tito_Scwrl_2VT2.pdb
: