Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEAVKTLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELSNYLASHMAGGDDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI
1T0T Chain:V ((6-248))
-----QTLDGWYCLHDFRTIDWSAWKTLPNEEREAAISEFLALVDQWETTESEKQGSHAVYTIVGQKADILFMILRPTLDELHEIETALNKTKLADYLLPAYSYVSVVELSNYLAS---GSEDPYQIPEVRRRLYPILPKTNYICFYPMDKRRQGNDNWYMLSMEQRRELMRAHGMTGRKYAGKVTQIITGSVGLDDFEWGVTLFSDDALQFKKLVYEMRFDEVSARFGEFGSFFVGTRLPMENVSSFFHV
General information:
TITO was launched using:
RESULT:
Template:
1T0T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140870 for 1821 contacts (-77.4/contact) +
2D Compatibility (PS) -26311 + (NN) -11557 + (LL) 964
1D Compatibility (HY) -30800 + (ID) 7200
Total energy: -215774.0 ( -118.49 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_1T0T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T0T-query.scw
PDB file :
Tito_Scwrl_1T0T.pdb
: