Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKIKSFLGKSLTLVVLGVFLFSGWKIG--MELYENKHNQTILDDAKAVYTKDAAT-TNVNGEVRDELRDLQKLNKDMVGWLTIIDTEIDYPILQSKDNDYYLHHNYKNEKARAGSIFKDYRNTNEFLDKNTIIYGHNMKDGSMFADLRKYLDKDFLVAHPTFSYESGLTNYEVEIFAVYETTTDFYYIETEFPETTDFEDYLQKVKQQSVYTSNVKVSGKDRIITLSTCDTEKDYEKGRMVIQGKLVTK
1RZ2 Chain:A ((35-253))
---------------------------IFMDYYENRK---VMAEAQNIYEKSPMEEQSQDGEVRKQFKALQQINQEIVGWITMDDTQINYPIVQAKDNDYYLFRNYKGEDMRAGSIFMDYRNDVKSQNRNTILYGHRMKDGSMFGSLKKMLDEEFFMSHRKLYYDTLFEGYDLEVFSVYTTTTDFYYIETDFSSDTEYTSFLEKIQEKSLYKTDTTVTAGDQIVTLSTCD------AGRLVVHAKLVKR
General information:
TITO was launched using:
RESULT:
Template:
1RZ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58197 for 1661 contacts (-35.0/contact) +
2D Compatibility (PS) -22461 + (NN) -7802 + (LL) 2576
1D Compatibility (HY) -25600 + (ID) 5100
Total energy: -116584.0 ( -70.19 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_1RZ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RZ2-query.scw
PDB file :
Tito_Scwrl_1RZ2.pdb
: