Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKKYGILALALTAALTLSACGGKEEPEAANQKVQTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSKEQY |
| 4GVO Chain:A ((8-243)) | ---------------------------------VQTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSKEQY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GVO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -72656 for 1888 contacts (-38.5/contact) +
2D Compatibility (PS) -25316 + (NN) -7489 + (LL) 2540
1D Compatibility (HY) -30000 + (ID) 11800
Total energy: -144721.0 ( -76.65 by residue)
QMean score : 0.600
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